Best software to analyze Novogene bulk RNA-seq

Question

[Aaron]

Hi all, I am have some bulk RNA-seq data generated by Novogene. I am looking for the most user-friendly analysis software (preferably available on GitHub, Bioconductor, or one of the other open-source software repositories). Can someone please make recommendations?

Answer 1

[ATpoint]

Novogene is just the company, it is regular RNA-seq, commonly referenced workflows are:

https://www.bioconductor.org/packages/devel/workflows/vignettes/RNAseq123/inst/doc/limmaWorkflow.html

https://bioconductor.org/packages/release/workflows/html/rnaseqGene.html