Anyone can suggest tools for detection isoform in long-read sequencing

Question

[ธาดา]

Hi, I have the fastq and bam file from the nanopore and then I want to detect the isoform but I don,t know any tools that can use for these. Anyone can help me

Thank you

Answer 1

[colindaven]

There is a load of current tools for long read isoform detection right here:

https://www.nature.com/articles/s41587-022-01565-y

• isoquant
• TALON
• Stringtie
• flair

Just Google with the name and github to pull up the code.