Haploview Aggressive Tagging no output
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7.2 years ago
sidwell ▴ 10

Hi, I'm trying to do an aggressive tagging on 1000G datas with a list of markers

java -jar Haploview.jar -n 
                        -out output 
                        -plink chr1.ped 
                        -map chr1.map 
                        -info info_file 
                        -minMAF 0.1 
                        -aggressiveTagging 
                        -includeTagsFile list_markers.txt 
                        -tagrsqcutoff 0.7

I don't have any error when I execute the command but I don't have any output file created neither log file. I know it is running because it takes time and if I give a fake file instead of my real files, it returns an error. So I believe it's working but I can't have any output.

Thanks for any help.

Haploview tagging output • 1.6k views
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Did you manage to get the output for the tags? If so, would you mind to share? Thanks

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