Functional annotation results with Eggnog mapper, For a same query several COGs, several GO:....

Question

[F.Bedjou]

Hello,

pleaaaase I need help !!! I performed a fonctionnal annotation for 2 set of transcriptomes with eggnogmapper, the problem is that I don't really know how to exploit this results ..

For example for the functional category COGs:

several COGs are sometimes assigned to the same query, why do I have these ? and how to overcome this and do an enrichment test between the 2 group of genes I had annotated. (Same probleme with GOs)

COG_category A
AB
AD
ADK ADL AJ
AK
AL
AO