Hi! I'm looking for a tool that can convert the 3D protein structure of a custom PDB file (not in any databases) into a 2D representation. So that the protein is laid out flat and "opened up" so you can see all loops, beta sheets and helices. Is there any such software out there?
Hi Wayne! Thanks for your elaborate response. I have now looked at the tools and it seems that they're all based on existing proteins. I failed to mention (corrected now), that this is for a custom protein (my own). Hence, it is not in any databases yet. Any such tools for that purpose?
Yes, two of the three mention uploading your own protein. (Although, I'm not confident ProLego server actually works now. It was supposed to do that functionality at one time.) PDDsum let's you use 'Generate' on the server. Or you can even download it. I put that in the post already & for further emphasis I just highlighted some of the appropriate parts.
Ah, you are right! Thank you.