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6 weeks ago
Purger • 0
I am working with metagenomic data.
After running InterProScan (IPS), I want to get only the genes related to a function (for example lipid-active enzymes).
I know that there are some databases that only focus on a group of genes (like CAZy, VFDB,...) but the group I am wondering about doesn't have any database like that.
Can someone tell me the way to filter the IPS output, or is there any other annotation tool providing the filter option?
I imagine you can filter on things like E.C. numbers and domain names using
R, or some other code.