Liftover from hg19 to hg38

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2.7 years ago

fabiopiscopo3 • 0

Hello everybody, my name is Fabio and in the last few days I'm trying to get into bioinformatics.

More specifically I have to do a liftover, I've found on GEO a .bed file RNA seq that I would like to analyze, these data have been analyzed by using as a reference genome the hg19, but since the more recent hg38 exist I would like to see if something change. I've tried the UCSC web based tool, and I got a bed file, but I don't know if I ve done it correctly and also I don't know how to get the infos about what have changed.

Could you please recommend me some tutorials or guide line?

RNAseq format bed analysis liftover • 909 views

ADD COMMENT • link updated 2.7 years ago by Pierre Lindenbaum 166k • written 2.7 years ago by fabiopiscopo3 • 0

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I don't know if I ve done it correctly

what makes you think this way ?

also I don't know how to get the infos about what have changed.

what info are you looking for ?

ADD REPLY • link 2.7 years ago by Pierre Lindenbaum 166k

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