R error when trying to run ssGSEA

Question

[3129821299]

I encounter a problem when I run ssGSEA by R. I wish to run it successfully. Could any kind person help me?

[LChart]

Have you tried case.when(as.vector(p) < 0.01 ...)?

[3129821299]

Thanks for your reply.

However I still got an error after applying the codes you have provided. Fortunately, I reset my codes,and it successfully runs. I think the reason is that the function (case_when) wants to deal with a vector, but what I give is a matrix of 28*2.

The change:

tmp = matrix(case_when(
  p[,1] < 0.001 ~ "***",
  p[,1] < 0.01 ~ "**",
  p[,1] < 0.05 ~ "*",
  TRUE ~ ""
), nrow = nrow(p),ncol = ncol(p))

[Ram]

Use appropriate tags and a concise specific title. "Thank you" is not a tag and "R error" is a generic title. Read: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002202

I've fixed things for you this time.

[3129821299]

Sorry,It's the first time I write a question and reply. I will pay more attention to it.Thanks you very much!