How to align two (or multiple) sequences, one (or part) of which is segmented?
0
0
Entering edit mode
14 months ago
luozx19 • 0

How to align two (or multiple) sequences, one (or part) of which is segmented? For example, given the following two sequences

AABBBC

DBBBC

If I know that the segmentation of the first is

AA | BBB | C

I want to align these two sequences while keeping the original segment of the first sequence. Is there any algorithm supporting this? Thanks!

anchor Alignment • 467 views
ADD COMMENT
0
Entering edit mode

I believe Clustal supports something like this for concatenated alignments. You can provide it an 'index' file, of where the joins between "segments" in your words would be.

Not sure if this is entirely what you're after but sounds similar.

ADD REPLY

Login before adding your answer.

Traffic: 2666 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6