how best to analyze vcf files
0
0
Entering edit mode
14 months ago
Mali • 0

I have more than 200 vcf and my task is to search for identical SNPs I can do it in python or R what the best way to start ?

vcf • 578 views
ADD COMMENT
1
Entering edit mode

If you're looking for variants shared over multiple samples, you can check out bcftools isec command.

ADD REPLY
1
Entering edit mode

There are multiple ways of doing this and probably you could find many similar posts in the forum, such as Intersect multiple VCF files

ADD REPLY

Login before adding your answer.

Traffic: 2184 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6