Entering edit mode
19 months ago
poecile.pal
▴
50
Good morning,
I have used modelTest {phangorn}
to test different nucleotide substitution models. There are 2 variants of Tamura-Nei model in it's output, which have differences in the number of degrees of freedom: TrNe has k+2 free parameters, TrN has k+5 free parameters.
In MEGAx
I see only one variant - "Tamura-Nei". But TrNe and TrN have different AIC, BIC.
Could you please explain if "Tamura-Nei" in MEGAx
corresponds to TrNe or Trn in modelTest {phangorn}
?
Best regards, Poecile