Entering edit mode
8 weeks ago
Saransh • 0
I am working on DNA methylation bisulphite sequencing data analysis using R (packages = methylkit and genomation).
I've successfully found the top methylated regions and have annotated them. But now I want to know that which annotated feature(e.g., NM_199260,NM_199259) belongs to which methylated region (chr, start_pos, end_pos).
The annotated file do not contain any chromosome, start or end positions instead it contains feature name as following:
NM_199260 NM_199259 NM_182484 NM_001187
So, I want to know how to associate the annotated regions (features) with the methylated regions and the p-values.
Thank you in anticipation.