How to find p-values for annotated methylated regions using methylkit and genomation
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14 months ago
Saransh • 0

Hi everyone,

Greetings!

I am working on DNA methylation bisulphite sequencing data analysis using R (packages = methylkit and genomation).

I've successfully found the top methylated regions and have annotated them. But now I want to know that which annotated feature(e.g., NM_199260,NM_199259) belongs to which methylated region (chr, start_pos, end_pos).

The annotated file do not contain any chromosome, start or end positions instead it contains feature name as following:

NM_199260
NM_199259
NM_182484
NM_001187

So, I want to know how to associate the annotated regions (features) with the methylated regions and the p-values.

Thank you in anticipation.

methylation-array NGS p-value • 551 views
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