Understand the CellReads.stat file output from STARsolo
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2.5 years ago
Cassandre • 0

Hello,

I want to understand the output file Solo.out/GeneFull_Ex50pAS/CellReads.stats from STARsolo with options --soloCellReadStats Standard and --soloFeatures GeneFull_Ex50pAS but I don't find any manual or instruction on the signification of each column, neither in the STAR manual.

The columns are: CB cbMatch cbPerfect cbMMunique cbMMmultiple genomeU genomeM featureU featureM exonic intronic exonicAS intronicAS mito countedU countedM nUMIunique nGenesUnique nUMImulti nGenesMulti

And the file looks like:

CellReads.stats head

I want to know for each read if the read is intronic or exonic type.

Thanks

statistics star starsolo • 739 views
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