CNA plots with gene names using GISTIC

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2.5 years ago

Bhaswatee • 0

enter image description here I have the GISTIC plots with amplification and deletion for my data but the plots show chromosome region where as I want to have gene names on the peak positions. I have attach a demo diagram below.

visualization CNA GISTIC • 1.3k views

ADD COMMENT • link 2.5 years ago by Bhaswatee • 0

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You've asked this same question on the gistic-forum google group as well. Please refrain from cross-posting.

ADD REPLY • link 2.5 years ago by Ram 45k

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How did you run GISTIC - what parameters did you use?

ADD REPLY • link 2.5 years ago by Ram 45k

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I ran the analysis with default parameters except for amplification and deletion thresholds at 0.1

ADD REPLY • link 2.5 years ago by Bhaswatee • 0

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Please show us the full command line.

ADD REPLY • link 2.5 years ago by Ram 45k

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I used the webtool. Will repeat the same using command line and update

ADD REPLY • link 2.5 years ago by Bhaswatee • 0

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