AttributeError: module 'collections' has no attribute 'Hashable'
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10 months ago
Hayler Edu ▴ 40

Hello everyone

I'm new using Spades and today I'm trying to do an assembly but I have a problem when I try to execute the pipeline.

This is my script: spades.py -1 B_cepacia_raw_R1_paired.fastq.gz -2 B_cepacia_raw_R2_paired.fastq.gz -o spades_error_corrected_reads -t 50 -m 500 --only-error-correctio

And this is the error: AttributeError: module 'collections' has no attribute 'Hashable'

You can see the error in the picture too.

enter image description here

I believe that the problem is related to Python but I'm not sure, someone can help me?

Spades • 1.8k views
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Top hit from a Google search should give you an answer.

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Currently I am experiencing the same problem. Have you solved this?

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