Entering edit mode
12 months ago
bioinformatics.girl
▴
20
Hello everyone, I called for FindMarkers() in order to find differential peaks between two biological conditions and the following was output ("diff.peaks").
My question is how would I generate a nice chart for GO analysis from this? My current code is:
install.packages("JASPAR2022")
library(JASPAR2022)
library(JASPAR2020)
library(clusterProfiler)
go_enrichment <- enrichGO(diff.peaks, universe = rownames(exc_subset),
OrgDb = "org.Mm.eg.db", keyType = "GENEID",
ont = "BP", pvalueCutoff = 0.05, qvalueCutoff = 0.05)
The following image is what I have. No q-value, so how would I change the parameters of "go_enrichment" to successfully carry this out?