Entering edit mode
11 days ago
alwayshope ▴ 20
Any solutions for the error when trying to construct the trinucleotideMatrix?
test_maf.tnm = trinucleotideMatrix(maf = test_maf, ref_genome = "BSgenome.Hsapiens.UCSC.hg38" ) ## some site/region cause the error -Extracting 5' and 3' adjacent bases -Extracting +/- 20bp around mutated bases for background C>T estimation Error in .Call2("C_solve_user_SEW", refwidths, start, end, width, translate.negative.coord, : solving row 999368: 'allow.nonnarrowing' is FALSE and the supplied end (38055) is > refwidth
Though changing the
C_solve_user_SEW function to set the
TRUE by copying the whole
IRanges-constructor.R script, it does not affect, and still shows the
Thanks a lot for any guidance!