merging structural variants from various callers into one vcf file (long read sequencing)
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13 months ago
Shaghayegh ▴ 20

Hi community. I have called structural variants from multiple callers designed for long read sequencing (Sniffles, NanoSV, CuteSV and Svim). Now I want to know is there any way I could merge these calls from all of these callers into one? Thanks.

vcf longread • 552 views
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If they output VCF files, you could try ConsensusSV: https://github.com/SFGLab/ConsensuSV-core

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