Question

How to download iGenomes from S3

1

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2.3 years ago

Chris ▴ 360

Hi all, I run a pipeline on HPC that got an error with pulling iGenomes from S3 so I try to download it to my cluster but don't know how. Would you have a suggestion? Thank you so much. enter image description here

https://ewels.github.io/AWS-iGenomes/

iGenome • 1.6k views

ADD COMMENT • link 2.3 years ago by Chris ▴ 360

score 3 · Accepted Answer · 2023-05-25

3

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2.3 years ago

GenoMax 153k

Use the following

wget http://igenomes.illumina.com.s3-website-us-east-1.amazonaws.com/Homo_sapiens/Ensembl/GRCh37/Homo_sapiens_Ensembl_GRCh37.tar.gz

ADD COMMENT • link 2.3 years ago by GenoMax 153k

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Thank you!

ADD REPLY • link 2.3 years ago by Chris ▴ 360