MIXCR is widely used to analyze the TCR/BCR sequencing data, which usually use the multiplex amplicon sequencing method.
We have design the 120bp probe to capture all the genes across IGH/IGL/IGK and TCR locus.
Since the latest mixcr v4 used the preset to analyze the data, which command should I use to analyze these data to get the types and percentage of the most enriched alleles ?
Or should I use igblast to get the results?
I am completely unfamiliar with this aspect, it will be of great help if someone could share some experiences.