methylation anysis

Question

[ali]

Hi everyone

Does anyone know that how I can analysis MBD-seq data with R?

I get a little confused because I could not find a good and complete tutorial to analysis Methylation data in particular MBD-seq data?

Thanks for your help

Answer 1

[Buffo]

According to this paper you can use RaMWAS for MBDseq.

[ali]

Thanks a lot. its so helpful

[ali]

but is had a problem, it has not function for differential methylation for reigns