Does Minknow in nanopore sequencing trim low qscore bases?
0
0
Entering edit mode
10 months ago
grkorompis • 0

Does Minknow in nanopore sequencing trim low q-score bases while running the sequencing when the q-score threshold is set? Because if that's the case, I was thinking that it would split the read as well, if for some reason the low quality base is found in the middle of the reads.

Alternatively, I assumed that instead of trimming low quality bases, it would instead average q sqore per read, and for any of those read who has low average q score than the threshold set in the minknow, then those reads would be fitered out.

Thank you.

filtering nanopore qc minknow ont • 377 views
ADD COMMENT

Login before adding your answer.

Traffic: 2034 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6