haploid genome phasing using close relative
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2.3 years ago
Amy • 0

I have a scaffold-level haploid genome assembly generated with PacBio hifi data for species A. I have a chromosome-level reference genome of a haploid close relative (species B), which has been phased into chromosomes and subgenomes. We presume they both have undergone the same genome duplication event.

I was wondering if could simply map my species A genome contigs onto the chromosomes of species B as a method of phasing? Or recommend specific software to resolve this.

assembly haploid-genome-phasing • 392 views
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