CGmaptools DMR output issue
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2.3 years ago
Bob • 0

I have a question regarding the use of CGmaptools for dmr analysis. I have a dataset of 6 CGmap files which I have intersected using the cgmaptools intersect function in preparation for DMR analysis. However, when I run cgmaptools dmr, my script returns an empty output file. I have inspected my input CGmap intersect files and there doesn't appear to be any issues with their formatting. I have attached the script I am using below for reference. Can anyone help with this? enter image description here

WGBS Methylation CGmaptools BSseeker • 577 views
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