Query regarding cytoscape installation and uninstallation in ubuntu
1
0
Entering edit mode
17 months ago

I installed Cytoscape in my Ubuntu system but I can not run it now it will be okay if I can install it or uninstall it perfectly for your kind information I have Java installed in my system. In my scenario, two copies of the icon of Cytoscape got installed, and both cannot be opened. Here is the following error when I run the Cytoscape command in my system -

(base) omic@omic-world-001:~$ Cytoscape
Unrecognized option: -Xdock:icon=./framework/cytoscape_logo_512.png
Error: Could not create the Java Virtual Machine.
Error: A fatal exception has occurred. Program will exit.
Cytoscape ubuntu • 1.8k views
ADD COMMENT
0
Entering edit mode
17 months ago
Scooter ▴ 280

Hi there,

Yes, this is a bug in the 3.10 installer. Rather than running "Cytoscape", run "cytoscape.sh" and things should be good, provided you have JAVA_HOME set to your jdk17 installation. I pretty much always run cytoscape.sh on Linux systems anyways (which is how this got missed).

-- scooter

ADD COMMENT
0
Entering edit mode

Thank you scooter sir for your response. but following command not worked showing output like this-

cytoscape.sh: command not found

ADD REPLY
0
Entering edit mode

Same issue. Already checked JAVA_HOME is set correctly.

ADD REPLY

Login before adding your answer.

Traffic: 1648 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6