Entering edit mode
9 months ago
ayaosama2111
▴
10
Hi everyone,
I am trying to install samtools, Rsamtools and bamtools using Conda but I always get this error for both:
Collecting package metadata (current_repodata.json): done
Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- bamtools
Current channels:
- https://conda.anaconda.org/bioconda/osx-arm64
- https://conda.anaconda.org/bioconda/noarch
- https://conda.anaconda.org/conda-forge/osx-arm64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/osx-arm64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/osx-arm64
- https://repo.anaconda.com/pkgs/r/noarch
To search for alternate channels that may provide the conda package you're looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
I tried several commands:
1- conda install -c bioconda samtools
2- conda install samtools openssl=1
3- conda install samtools=1.17
What computer do you have ?
If you have a Apple > November 2020 (ARM architecture) there is plenty of missing packages.
If you look here https://anaconda.org/bioconda/bamtools bamtools is available for osx-64 linux-64 but not osx-arm64