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User: Juke-34

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Juke-34 • 2.2k
Reputation:
2,200
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Location:
Sweden
Last seen:
9 hours ago
Joined:
4 years, 11 months ago
Email:
j*************@gmail.com

Posts by Juke-34

<prev • 324 results • page 1 of 33 • next >
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Answer: A: filter gff3 file for complete gene
... You can try the script `gff3_sp_manage_UTRs.pl` from the [GAAS][1] repository. I guess it should do what you want. [1]: https://github.com/NBISweden/GAAS ...
written 2 days ago by Juke-34 • 2.2k
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Comment: C: How To Merge Gff Files
... How does it deal with overlapping loci? Merging them as a single locus? ...
written 4 days ago by Juke-34 • 2.2k
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Comment: C: remove UTR annotations from gff
... Weird that the phase of the second CDS have changed from 1 to 2 during the process. A bug or copy past problem? ...
written 6 days ago by Juke-34 • 2.2k
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Comment: C: repeatmasker species setting
... yes as say SMK then adding `./` in front should be enough. It will execute it. Or you could as well do `perl queryRepeatDatabase.pl -h` ...
written 11 days ago by Juke-34 • 2.2k
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Comment: C: repeatmasker species setting
... do `ls -l` in the `util` folder to see what script is there (copy the result here). What version of repeatmasker do you have? ...
written 11 days ago by Juke-34 • 2.2k
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Answer: A: repeatmasker species setting
... Using `queryTaxonomyDatabase.pl -h` and `queryRepeatDatabase.pl -h` scripts you should find what you want. They are in the `util` folder coming with repeatmasker. ...
written 11 days ago by Juke-34 • 2.2k
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Comment: C: Pipeline transposable elements
... A pain to install, still waiting for a proper container. ...
written 27 days ago by Juke-34 • 2.2k
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Comment: C: Errors in file embl
... Fix pushed in EMBLmyGFF3 version 1.2.5 ...
written 8 weeks ago by Juke-34 • 2.2k
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Comment: C: Assembler for only nanopore data
... Have a look [here][1] you will probably find what you want. [1]: https://long-read-tools.org/categories.html ...
written 8 weeks ago by Juke-34 • 2.2k
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Comment: C: Command for counting gene model after each round of MAKER
... What does `summary.sh` ? ...
written 8 weeks ago by Juke-34 • 2.2k

Latest awards to Juke-34

Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Status of maker annotation
Scholar 8 weeks ago, created an answer that has been accepted. For A: How to convert exon genomic coordinates to protein coordinates
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Status of maker annotation
Scholar 9 weeks ago, created an answer that has been accepted. For A: How to convert exon genomic coordinates to protein coordinates
Scholar 9 weeks ago, created an answer that has been accepted. For A: How to convert exon genomic coordinates to protein coordinates
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Status of maker annotation
Appreciated 3 months ago, created a post with more than 5 votes. For A: Script for getting summary statistic of any genome using GTF or GFF3 ?
Popular Question 3 months ago, created a question with more than 1,000 views. For Bioperl gff3 : How to print non gff3 feature as "###" using Bio::Tools::GFF
Scholar 4 months ago, created an answer that has been accepted. For A: How to convert exon genomic coordinates to protein coordinates
Scholar 5 months ago, created an answer that has been accepted. For A: How to convert exon genomic coordinates to protein coordinates
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Status of maker annotation
Scholar 6 months ago, created an answer that has been accepted. For A: How to convert exon genomic coordinates to protein coordinates
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Status of maker annotation
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Status of maker annotation
Appreciated 7 months ago, created a post with more than 5 votes. For A: Script for getting summary statistic of any genome using GTF or GFF3 ?
Appreciated 7 months ago, created a post with more than 5 votes. For A: Script for getting summary statistic of any genome using GTF or GFF3 ?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Status of maker annotation
Appreciated 7 months ago, created a post with more than 5 votes. For A: Script for getting summary statistic of any genome using GTF or GFF3 ?
Popular Question 9 months ago, created a question with more than 1,000 views. For Bioinformatician in genome annotation, Uppsala, Sweden
Scholar 11 months ago, created an answer that has been accepted. For A: How to convert exon genomic coordinates to protein coordinates
Popular Question 13 months ago, created a question with more than 1,000 views. For Bioinformatician in genome annotation, Uppsala, Sweden
Good Answer 15 months ago, created an answer that was upvoted at least 5 times. For A: Trinity strand specific: RF or FR
Appreciated 16 months ago, created a post with more than 5 votes. For A: Script for getting summary statistic of any genome using GTF or GFF3 ?
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Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Where is it possible to submit annotated eukaryote genomes?
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