I have these IGV outputs (I do not filter supplementary and secondary alignments) :
I suspect a "duplicated inversion" in an other region on the same chromosome :
All the soft clipped reads in the first region are found in the other one. Also, when a soft-clipped read is aligned on the (+) strand in the first region, it is aligned on the reverse strand in the other region. And vice versa.
Can we consider this variation as a "duplicated inversion" ?