Quality control ATAC-seq, using plotFingerprint deepTools

Question

[Chris]

Hi all,

I am not sure if wf sample has technical issue. Would you please have a comment? Thank you so much!

plotFingerprint  -b *.bam --labels mf wf --minMappingQuality 30 --skipZeros -T "Fingerprints of different samples"  --plotFile fingerprints.png --outRawCounts fingerprints.tab