agriGO calculate q-value
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2.1 years ago
sumitra.20 • 0

Hi everyone,

I have been using agriGOv2 for GO enrichment analysis and the output generates GO term,Ontology,Description,Number in input list,Number in BG/Ref,p-value,FDR. I was wondering if there is a way to get q-value? Paper (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896167/) states that method to calculate q-value with Storey is available. However, i cant seem to find such option. I would like to use the q-value for other analysis like clusterprofiler

transcriptome clusterprofiler agrigo go_enrichment • 476 views
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