I am trying to deploy colabfold on GCP. Currently I'm using the solution GCP previewed from this repo.
After getting past a few initial errors, I am now trying to submit up to 350 small fasta files for analysis. But so far none of the 8 workflows I've submitted are working. I've tried adjusting the size of the input, but to no avail. I can't find any documentation on the errors. One of the common errors looks like a API request timed out, so ultimately I'm working towards a nextflow solution where we host the databases, but until then this is the next best solution (the colabfold notebooks don't allow enough throughput for our goals). Here is the most common error I am getting:
exceeded maximum number of steps = 100000
in step "sleep", routine "runColabfoldPipeline", line: 105
{
"message": "exceeded maximum number of steps = 100000",
"tags": [
"StepCountLimitExceededError",
"ResourceLimitError"
]
}
However, with respect the GCP , I am unsure what these errors mean. I suspect it's likely I need to request a quota increase on something, but I can't find anything related to "step counts" there.
