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7 months ago
ccbb7aab4
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20
Hi I've tried to run Infercnv, but it seems to be stuck on step 8. STEP 08: removing the average of reference data (before smoothing)
INFO [2023-10-04 14:34:12] ::subtract_ref_expr_from_obs:Start inv_log=FALSE, use_bounds=TRUE INFO [2023-10-04 14:34:12] subtracting mean(normal) per gene per cell across all data INFO [2023-10-04 14:35:30] -subtracting expr per gene, use_bounds=TRUE
I have tried to parallel to help with the computational side. But I think it's struggling with the size of the matrix. Any ideas on how long this task usually takes on a larger matrix? I have left it running for about two days before. ~160,625 Cells
