How to find OS duration, status information of patients in GSE1159 (Microarray data analysis)
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6 months ago
sf.jeong510 ▴ 10

Hello, many papers showed survival analysis using GSE1159 (N Engl J Med 2004; 350:1617-1628 and etc...). Although I got pData in GSE1159 in R, I didn't find OS, status of patient infromation. how to get this information?

The code I used is below.

gset <- getGEO("GSE1159", GSEMatrix =TRUE, getGPL=FALSE)

if (length(gset) > 1) idx <- grep("GPL570", attr(gset, "names")) else idx <- 1

gset <- gset[[idx]]

info <- pData(gset)

clin.info <- rownames_to_column(info, var = "SN")

Thanks.

Microarray • 254 views
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