Entering edit mode
6 months ago
sf.jeong510
▴
10
Hello, many papers showed survival analysis using GSE1159 (N Engl J Med 2004; 350:1617-1628 and etc...). Although I got pData in GSE1159 in R, I didn't find OS, status of patient infromation. how to get this information?
The code I used is below.
gset <- getGEO("GSE1159", GSEMatrix =TRUE, getGPL=FALSE)
if (length(gset) > 1) idx <- grep("GPL570", attr(gset, "names")) else idx <- 1
gset <- gset[[idx]]
info <- pData(gset)
clin.info <- rownames_to_column(info, var = "SN")
Thanks.