Is there an alternative for the Proteasix database?

Question

[georgiamorgannn]

Hi there,

I wanted to use the proteasix prediction tool - http://proteasix.cs.man.ac.uk/pred.html# - but it doesn't seem to be working at the moment.

I wanted to input protein UniProt IDs with corresponding start and stop amino acid positions of peptides within the full-length protein. I wanted the prediction tool to tell me, from this information, which proteases were most likely to have cleaved the peptide sequence from the original protein. I have around 800 peptides so this is difficult to do by hand.

I wondered if anyone could suggest an alternative to proteasix that I could try that might do the same thing?

Many thanks!

[GenoMax]

Have you considered emailing the address listed? Sometime labs put these tools up and once a grad student/post-doc leaves the PI may forget their existence. You may also want to directly email the PI to see if they care about fixing the issue.

[georgiamorgannn]

Thanks for the suggestion! Yes I did email them a while ago and no reply just yet, emailing the PI is probably a good idea