How to find OS duration, status information of patients in GSE1159 or GSE6891 (Microarray data analysis)
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6 months ago
sf.jeong510 ▴ 10

Hello. I want to analyze the survival of AML patients in GSE1159 and GSE6891. However, the datasets for these series do not have survival data (OS, status). Many papers have shown survival curves for these series. Please help me

my R code is below.

The code I used is below.

gset <- getGEO("GSE1159", GSEMatrix =TRUE, getGPL=FALSE)

if (length(gset) > 1) idx <- grep("GPL570", attr(gset, "names")) else idx <- 1

gset <- gset[[idx]]

info <- pData(gset)

clin.info <- rownames_to_column(info, var = "SN")

Thanks.

Microarray • 270 views
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