"IndexError: list index out of range" error while running BETA (Cistrome)
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5 months ago

Dear all,

I am getting the error "indexError: list index out of range" while running BETA basic on centos server. Please find the error and input files screenshot attached with this message.

Command used: BETA basic -p hcleaf.27me3.final_peaks_macs3_5col.bed -e expr_cuff_HL-JL_3-10-13.tsv -k CUF -r GCF_000331145.1_ASM33114v1.ncbiRefSeq.extracted-cols.gtf --da 500

error1.1

error1.2

EXPR File Format

ncbiRefSeq.gtf

Looking forward to the resolution.

Thank you for your time.

Best regards,

Chanderkant

BETA • 275 views
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