Compute matrix skipping many regions stating not found in compute matrix output
0
0
Entering edit mode
12 weeks ago
mavy ▴ 10

Hello all

I am working on Chip seq data and for generating the TSS Plots when I am computing the matrix it is giving a very long list stating "skipping NR_049895_r4, due to being absent in the computeMatrix output." and the list is very long . I tried both the bed file and the GTF file as I want to display all chromosome regions.

Any guide/suggestion on what could be the reason .

Thanks

computematrix Deeptools • 243 views
ADD COMMENT

Login before adding your answer.

Traffic: 2018 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6