vcftools
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12 weeks ago
sevda • 0

Hi, I tried this code but I couldn't get any output. Please guide me to resolve this issue

for i in {1..2}
do
  vcftools --LROH --vcf Pakistan.total.vcf --out ${i} --chr i
done
vcftools • 481 views
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1
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It might be because vcftools is depricated, try to use bcftools instead, might be helpful :)

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Deprecated tools don't just stop producing output/errors, that's now how deprecation works.

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couldn't get any output

What does that mean? What did you see on the screen when you ran this command? Did the command run successfully or did it fail? Did you see any new files created after the command ended?

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Hello, Thank you for your attention. It ran successfully and I got no errors or warnings but no new files were created.

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What output files were you expecting? Was nothing printed on the screen at all?

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