Entering edit mode
4 months ago
mk
▴
290
This GSE series has multiple supplemental files that are listed as Series_supplemental_file in the GSE163697_family.soft.gz and shown in the "Supplementary file" table you see with many GSE series on GEO and shown in the picture below:
However, it seems that GEOparse.GSE.download_supplementary_files() only looks for SRA metadata for the associated GSM files, and ignores series supplementary files mentioned above:
geo_accession = "GSE163697"
gse = GEOparse.GSE.get_GEO(geo=geo_accession, destdir=destination_directory)
gse.download_supplementary_files(
download_sra=False,
directory=destination_directory,
email="me@gmail.com",
sra_kwargs={'threads':32})
Is there any option to get series supplemental files as well?
