Currently using hdWGCNA for network construction in a scRNAseq dataset, and I keep identifying branches on the cluster dendrogram that look robust in terms of dissimilarity, but that fail to be assigned as modules. Figure attached. The branches in question are the two that reach ~0.65 and 0.75 on the y-axis, to the right of the 'yellow' module branch. Adjusting minModuleSize has no effect.
Has anyone encountered this issue of 'missing' modules before?