Entering edit mode
21 months ago
ondfe102
•
0
I am trying to create a dataframe with all my background genes in order to correctly perform GO pathway analysis. To do this I've used a following code:
all_genes <- bitr(rownames(merge_table), fromType = "SYMBOL",
toType = "ENTREZID", OrgDb = org.Hs.eg.db)
background_genes <- all_genes$ENTREZID
I have obtained a warning message:
In bitr(rownames(merge_table), fromType = "SYMBOL", toType = "ENTREZID", :
0.21% of input gene IDs are fail to map...
Is this warning message problematic or can I run my code despite it? What are the possible ways of fixing this issue? I have looked and I do not have any N/A in my code.