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20 months ago
abba647
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10
I am trying to introduce myself to proteomic data analysis and wanted to ask if anyone would know where to find data to analyze (for example, PRIDE?), which files to download and whether there are any step-by-step tutorials available online.
I think you're going to have to be a little more specific. The field of proteomics is vast, and has thousands of different analytical pipelines for different use cases. What are you specifically interested in learning?
And there are a lot of different open proteomic data repositories: PRIDE, ENCODE, PeptideAtlas, PDB, Uniprot, etc. It really depends on organism and intention.
If I apply the Variable Measured: Proteomics filter to the entire NIAID Data Ecosystem database, I get almost 30k results: https://data.niaid.nih.gov/search?q=&filters=%28variableMeasured.name.raw%3A%28%22Proteomics%22%29%29&from=1
But you can further filter this down to something more specific. Or the advanced search tool may be very useful to you if you want to query the database by File Encoding Type or other specific fields, for example, you could search for all XML files with 'proteomics' in the description: https://data.niaid.nih.gov/search?q=distribution.encodingFormat%3A%22XML%22+AND+description%3A%22proteomics%22