Proteomic data search and analysis

Question

[abba647]

I am trying to introduce myself to proteomic data analysis and wanted to ask if anyone would know where to find data to analyze (for example, PRIDE?), which files to download and whether there are any step-by-step tutorials available online.

[dthorbur]

I think you're going to have to be a little more specific. The field of proteomics is vast, and has thousands of different analytical pipelines for different use cases. What are you specifically interested in learning?

And there are a lot of different open proteomic data repositories: PRIDE, ENCODE, PeptideAtlas, PDB, Uniprot, etc. It really depends on organism and intention.