How can I determine the p-value of genes within each identified module in WGCNA?
0
0
Entering edit mode
10 months ago
hiamour • 0

When utilizing the exportNetworkToCytoscape function, I noticed that it provides essential attributes such as "fromNode", "toNode", "weight", "direction", "fromAtlname", and "toAtlname". However, for my analysis, I require the inclusion of the p-value. My objective is not solely to export genes to Cytoscape but to extract genes that co-express within each module. Hence, having the p-value during exportation would be crucial.

Is there a method to obtain the p-value alongside these attributes? Alternatively, should I calculate pairwise correlations for each module separately? If so, could you guide me on how to proceed with this approach?

Your assistance would be greatly appreciated. Thank you.

WGCNA exportNetworkToCytoscape • 328 views
ADD COMMENT
0
Entering edit mode

What p-value do you mean? When and how did you calculate it?

ADD REPLY

Login before adding your answer.

Traffic: 2746 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6