Cytoscape to visualize metanodes
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8 weeks ago
Giovanni ▴ 10

Hi!

I'd like to understand which cytoscape plugin is best for my use case. I developed a pairwise local allignment algorithm, that outputs a graph made of nodes representing drosophila and homo sapiens proteins. Each node has a field "Organism" that store the organism to which the node belongs to, and a field "array" to store a list of similar proteins belonging to the organism. There's no overlapping between the proteins of two different nodes.

I'm looking for a way to visualize my graph like eXamine Cytoscape's plugin does. Do you know how to use this or other plugins in my specific use case?

Thank you so much!

graph examine cytoscape • 338 views
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Entering edit mode
8 weeks ago
xanderpico ▴ 540

Not entirely sure I follow your example and understand what you want, but having looked at eXamine, here are few other options that leverage the concepts of sets in Cytoscape:

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