Deconvolution: bulk and cell signature data from different platforms or technologies
0
1
Entering edit mode
8 weeks ago

I am using CIBERSORT to infer cellular compositions in bulk RNASeq count data that is assayed from human skin. Does anyone have suggestions for the following questions? Thank you in advance.

  1. If my cell signature data is from Microarray assays. Is it necessary to normalize/pre-process the bulk and signature data before deconvolution? If so, what methods can I use?

  2. Is there a database that stores signature data of cell types in various tissues?

CIBERSORT RNASeq Microarray deconvolution signature • 232 views
ADD COMMENT

Login before adding your answer.

Traffic: 2274 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6