Rna editing
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7 weeks ago
RUBEM • 0

Hi everyone, I have data from a variant call in rna-seq and I wanted to check if some of the variants are linked to the rna editing effect, I already researched it and didn't find a satisfactory answer.

abs.

annotation transcriptome rna-seq • 526 views
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As in you found workflows but disagree with the logic? Please provide more information as we don't know what answers you've found unsatisfactory, or why.

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In fact, I found more talking about the RNA editing process than tools that can perform this analysis. My question is how I could do it, whether I use bam aligned or the vcf file and which tool I can use. Sorry, I'm not that experienced in bioinformatics.

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6 weeks ago
HH ▴ 10

I have followed methods proposed by David Liu and other researchers, such as GATK4, REDITools2, and the SAILOR pipeline. All these reference-genome-based methods without controls have significant drawbacks.

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In this case, I only have rna-seq data, is it difficult to execute this SAILOR pipeline?

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