NanoPlot quality data
1
0
Entering edit mode
6 weeks ago

I would like to know what the quality ranges are for Nanoplot and what criteria are used to determine these quality ranges or obtained quality results. my results were:

sample 1
General summary:        
Mean read length:                569.0
Mean read quality:                14.0
Median read length:              221.0
Median read quality:              13.6
Number of reads:              18,713.0
Read length N50:               1,741.0
Total bases:              10,648,246.0
sample 2
General summary:        
Mean read length:               2,283.7
Mean read quality:                 14.0
Median read length:             1,390.0
Median read quality:               13.8
Number of reads:              161,819.0
Read length N50:                4,108.0
Total bases:              369,538,332.0

Is my quality data good or bad?

quality Nanoplot • 276 views
ADD COMMENT
0
Entering edit mode

Don't compare nanopore data with Illumina quality scores. This data looks fine for nanopore.

ADD REPLY
0
Entering edit mode
6 weeks ago
Arton • 0

If this is Nanopore long read data your "Mean read length" seems to be very low.

ADD COMMENT

Login before adding your answer.

Traffic: 1741 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6