convert cds to seurat object
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12 weeks ago
sooni ▴ 20

Hello.

I want to make pseudo-bulk data from single cell data. I made cds from my single cell raw data. Now, I want to convert this cds format to seurat object. Is it possible?

Thank you for your help!

R monocle3 seurat • 391 views
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12 weeks ago

Did you try with "as.Seurat"? https://github.com/satijalab/seurat-wrappers/blob/master/docs/monocle3.md

integrated.sub <- as.Seurat(cds)
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Yes, I tried with as.Seurat. But there is an error follwing: Error: No data in provided assay - logcounts. How can I solve this problem?

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Did you check the data in the assay of the cell_data_set object?

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