How to use the Rfoot output to eliminated nonribosomal sequence reads
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18 days ago
nonaddldy ▴ 10

Here is the output of Rfoot v1.0 Here is the output of Rfoot v1.0

If I just use the position to search in the source SAM file, there is no matched result, so how should I do can match the records and then eliminated nonribosomal sequence reads If I just use the position to search in the source SAM file, there is no matched result, so how should I do can match the records and then eliminated  nonribosomal sequence reads

profiling ribosome ribo-seq Rfoot • 158 views
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1
Entering edit mode
18 days ago
nonaddldy ▴ 10

I find samtools view samtools view $out_prefix.bwa.bam chr7:92123232-92123232 can match the result, maybe it is worked enter image description here

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